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2 edition of Image analysis quantification of in situ hybridization signals in human cells. found in the catalog.

Image analysis quantification of in situ hybridization signals in human cells.

Ria Vaizie

Image analysis quantification of in situ hybridization signals in human cells.

by Ria Vaizie

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  • 14 Currently reading

Published by The Author] in [S.l .
Written in English


Edition Notes

Thesis (M. Sc. (Biomedical Sciences)) - University of Ulster, 1993.

The Physical Object
Paginationvi, 23, [3]p., tables, 2p. of plates :
Number of Pages23
ID Numbers
Open LibraryOL21162798M

Determination of the temporal and spatial pattern of gene expression is an important step in understanding gene function during C. elegans development. The expression pattern of a gene can be examined in several ways including transgenic reporter fusions (e.g., gfp, β-galactosidase), as well as immunohistochemistry and RNA in situ hybridization for analysis of the endogenous protein and .   The incidence of chromosomal aneuploidy was analysed in unfertilized human oocytes and 56 first polar bodies using a double‐label fluorescence in‐situ hybridization (FISH) procedure. Combinations of centromeric (or locus‐specific) DNA probes and whole chromosome painting probes for chromosomes 9, 13, 16, 18, 21 and X were applied on Cited by:

The fluorescent in situ hybridization (FISH) probes are applied to intact cells and observed microscopically for the presence and location of specific genetic marker sequence on genes Sequencing a gene automatically identifies which gene it is. Look at the degree of hybridization, by incorporating a fluorescent dye into the sample and measuring the amount of fluorescence when imaging the microarray probe spot. e.g. if the gene is expressed in cancer and normal the fluorescence will be a different colour to if the gene is only expressed in one of the 2.

fluorescence in situ hybridization probes targeting health state-associated intestinal bacteria for quantification and single cell analysis“ Verfasser Jochen Reichert angestrebter akademischer Grad Magister der Naturwissenschaften (Mag. rer. nat.) Studienkennzahl lt. Studienblatt: A Studienrichtung lt. Studienblatt: Genetik - Mikrobiologie. FRET pair miniprobes stain telomeres in human cells. (a) Interphase U2OS cell nuclei were stained with the SCy3-γPNA, XγPNA, or a mix of both by fluorescence in situ hybridization (FISH), with or without wash steps. Images were captured using filters for SCy3 excitation and emission (red), X excitation and emission (white) or SCy3 Cited by: 6.


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Image analysis quantification of in situ hybridization signals in human cells by Ria Vaizie Download PDF EPUB FB2

Software solutions for all your research needs. The single-molecule sensitivity and visualization makes quantitative RNA in situ hybridization analysis a cutting edge gh many labs do evaluate target probe signals manually using scoring guidelines, the tasks are time consuming and prone to subjectivity and poor reproducibility.

In situ hybridization; overview of a useful tool for anatomical analysis. A useful tool developed to visualize the spatial expression patterns of mRNAs is in situ hybridization (ISH), a technique used to localize nucleic acid sequences in tissue sections or cell culture samples.

ISH involves using a nucleotide sequence that is tagged or labeled with a detection by: The feasibility of the quantification procedure is exemplified by the comparative quantification of multiple calmodulin mRNAs in the rat brain by in situ hybridization with [35S]-cRNA probes.

Fluorescence in situ hybridization (FISH) has become an important tool not only in cytogenetic research but also in routine clinical chromosome diagnostics.

Here, results of a quantification of fluorescence signals after in situ hybridization with repetitive DNA probes are reported using a non-enzymatic hybridization technique.

This chapter discusses a method by which in situ hybridization histochemistry (ISHH) may be used to analyze quantitatively changes in messenger RNA (mRNA) expression in individual cells in experiments that provide the means to determine the way in which components of neural systems interact to alter the function of those neural systems.

The methodological approach described in the chapter Cited by: The paper describes automated segmentation and analysis of the microscopic images resulting from fluorescence in-situ hybridization (FISH) analysis.

FISH is a popular molecular cytogenetic method. In situ hybridization Brain coronal sections (14 ~zm) were cut and thaw mounted on gelatin-coated microscope slides and kept dessicated at until the in situ hybridization experiment.

Mounted sections were brought to room temperature and rapidly im- mersed in 4% paraformaldehyde freshly prepared in M phosphate-buffered saline (PBS).Cited by: Quantitative analysis of messenger RNA (mRNA) from tissue homogenates, cell extracts, or fixed tissue sections is vital for studies involving gene regulation and expression.

Quantitative analysis of mRNA allows the investigator to establish the transcription level Cited by: 1. In situ hybridization (ISH) is a type of hybridization that uses a labeled complementary DNA, RNA or modified nucleic acids strand (i.e., probe) to localize a specific DNA or RNA sequence in a portion or section of tissue or if the tissue is small enough (e.g., plant seeds, Drosophila embryos), in the entire tissue (whole mount ISH), in cells, and in circulating tumor cells (CTCs).

In situ hybridization (ISH) is a powerful technique for localizing specific nucleic acid targets within fixed tissues and cells, allowing you to obtain temporal and spatial information about gene expression and genetic loci.

While the basic workflow of ISH is similar to that of blot hybridizations—the nucleic acid probe is synthesized, labeled, purified, and annealed with the specific target. Aims: To develop and evaluate an automated method for quantification of HER2 fluorescence in situ hybridisation (FISH) signals.

Methods: Using a popular, open source image manipulation tool, ImageJ, a macro for FISH signal assessment was created. A comparison against traditional manual counting was performed in breast cancer specimens from 42 by:   Abstract.

Fluorescence in situ hybridization (FISH) has a wide spectrum of applications in current molecular cytogenetic and cancer research. This is a unique technique that can be used for chromosomal DNA analysis in all cell types, at all stages of the cell cycle, and at molecular by: 6.

Title: In Situ Hybridization and Image Analysis on Nuclei Sorted on the Basis of DNA Content Subject: Many investigators have used flow cytometry to classify abnormal cell populations in tumors by measuring the DNA content of each cell.1,2 Flow cytometry allows an investigator to evaluate large numbers of cells or nuclei, typically f to 50, in a relatively short time.

The use of in situ hybridization (ISH) and PCR assays have both been reported for DNA analysis in formalin-fixed archival tissues (6, 7, 25, 40, 42, 48). Both assays have the advantage that only small amounts of tissue are required, and both tolerate the degradation of target nucleic acids due to the formalin fixation and paraffin-embedding Cited by: Multiplex fluorescence in situ hybridization (FISH) enables you to assay multiple targets and visualize colocalized signals in a single specimen.

Using spectrally distinct fluorophore labels for each hybridization probe, this approach gives you the power to resolve several genetic elements or multiple gene expression patterns through multicolor visual display.

Comparative genomic hybridization (CGH) is a molecular cytogenetic method for analysing copy number variations (CNVs) relative to ploidy level in the DNA of a test sample compared to a reference sample, without the need for culturing cells.

The aim of this technique is to quickly and efficiently compare two genomic DNA samples arising from two sources, which are most often closely related. Fluorescence in situ hybridization (FISH) is a molecular cytogenetic technique that uses fluorescent probes that bind to only those parts of a nucleic acid sequence with a high degree of sequence was developed by biomedical researchers in the early s to detect and localize the presence or absence of specific DNA sequences on chromosomes.

Main focus of GENE QUANTIFICATION web page is to describe and summarize all technical aspects involved in quantitative gene expression analysis using real-time RT-PCR and competitive RT-PCR.

It illustrates the usefulness of absolute and relative quantification assays in. Introduction. In situ Hybridization (ISH) is a method that allows to localize and detect nucleic acid sequences within structurally intact cells or morphologically preserved tissues sections. Fluorescence in situ hybridization (FISH) is a kind of ISH which uses fluorescent probes binding parts of the chromosome to show a high degree of sequence complementarity.

Dramatically improved RNA in situ hybridization signals using eukaryotic cells ranging from yeast to human origin, and SSA4 RNA-FISH analysis in the Drip1 mutant. Cells were grown at 25 C and fixed after a min temperature shift to 42 C. This shift concomitantly induces SSA4 transcription and the Drip1-induced mRNA.

Protocol Use of Fluorescence In Situ Hybridization and the daime Image Analysis Program for the Cultivation-Independent Quantification of Microorganisms in Environmental and Medical Samples.

Holger Daims; Cold Spring Harb Protoc; ; doi: /tools for bio-data analysis, and (4) development of advanced, effective, and scalable data mining methods in bio-data analysis [9]. The objective of any microarray data analysis is to draw biologically meaningful conclusions [12], [38].

In order to support this objective, we will focus on microarray image processing issues in this chapter. This book is a unique source of information on the present state of the exciting field of molecular cytogenetics and how it can be applied in research and diagnostics.

The basic techniques of fluorescence in situ hybridization and primed in situ hybridization (PRINS) are outlined, the multiple approaches and probe sets that are now available for these techniques are described, and .